[Improvement] improve github loader (#984)

docs/data-sources/github.mdx

@@ -0,0 +1,50 @@
+---
+title: 📝 Github
+---
+
+1. Setup the Github loader by configuring the Github account with username and personal access token (PAT). Check out [this](https://docs.github.com/en/enterprise-server@3.6/authentication/keeping-your-account-and-data-secure/managing-your-personal-access-tokens#creating-a-personal-access-token) link to learn how to create a PAT.
+```Python
+from embedchain.loaders.github import GithubLoader
+
+loader = GithubLoader(
+    config={
+        "token":"ghp_xxxx"
+        }
+    )
+```
+
+2. Once you setup the loader, you can create an app and load data using the above Github loader
+```Python
+import os
+from embedchain.pipeline import Pipeline as App
+
+os.environ["OPENAI_API_KEY"] = "sk-xxxx"
+
+app = App()
+
+app.add("repo:embedchain/embedchain type:repo", data_type="github", loader=loader)
+
+response = app.query("What is Embedchain?")
+# Answer: Embedchain is a Data Platform for Large Language Models (LLMs). It allows users to seamlessly load, index, retrieve, and sync unstructured data in order to build dynamic, LLM-powered applications. There is also a JavaScript implementation called embedchain-js available on GitHub.
+```
+The `add` function of the app will accept any valid github query with qualifiers. It only supports loading github code, repository, issues and pull-requests.
+<Note>
+You must provide qualifiers `type:` and `repo:` in the query. The `type:` qualifier can be a combination of `code`, `repo`, `pr`, `issue`. The `repo:` qualifier must be a valid github repository name.
+</Note>
+
+<Card title="Valid queries" icon="lightbulb" iconType="duotone" color="#ca8b04">
+    - `repo:embedchain/embedchain type:repo` - to load the repository
+    - `repo:embedchain/embedchain type:issue,pr` - to load the issues and pull-requests of the repository
+    - `repo:embedchain/embedchain type:issue state:closed` - to load the closed issues of the repository
+</Card>
+
+3. We automatically create a chunker to chunk your GitHub data, however if you wish to provide your own chunker class. Here is how you can do that:
+```Python
+from embedchain.chunkers.common_chunker import CommonChunker
+from embedchain.config.add_config import ChunkerConfig
+
+github_chunker_config = ChunkerConfig(chunk_size=2000, chunk_overlap=0, length_function=len)
+github_chunker = CommonChunker(config=github_chunker_config)
+
+app.add(load_query, data_type="github", loader=loader, chunker=github_chunker)
+```

docs/data-sources/mysql.mdx

@@ -21,7 +21,6 @@ For more details on how to setup with valid config, check MySQL [documentation](
 
 2. Once you setup the loader, you can create an app and load data using the above MySQL loader
 ```Python
-import os
 from embedchain.pipeline import Pipeline as App
 
 app = App()

docs/data-sources/overview.mdx

@@ -25,6 +25,7 @@ Embedchain comes with built-in support for various data sources. We handle the c
   <Card title="🤖 Slack" href="/data-sources/slack"></Card>
   <Card title="🗨️ Discourse" href="/data-sources/discourse"></Card>
   <Card title="💬 Discord" href="/data-sources/discord"></Card>
+  <Card title="📝 Github" href="/data-sources/github"></Card>
 </CardGroup>
 
 <br/ >

embedchain/data_formatter/data_formatter.py

@@ -64,7 +64,6 @@ class DataFormatter(JSONSerializable):
             DataType.GMAIL: "embedchain.loaders.gmail.GmailLoader",
             DataType.NOTION: "embedchain.loaders.notion.NotionLoader",
             DataType.SUBSTACK: "embedchain.loaders.substack.SubstackLoader",
-            DataType.GITHUB: "embedchain.loaders.github.GithubLoader",
             DataType.YOUTUBE_CHANNEL: "embedchain.loaders.youtube_channel.YoutubeChannelLoader",
             DataType.DISCORD: "embedchain.loaders.discord.DiscordLoader",
         }
@@ -75,6 +74,7 @@ class DataFormatter(JSONSerializable):
                 DataType.MYSQL,
                 DataType.SLACK,
                 DataType.DISCOURSE,
+                DataType.GITHUB,
             ]
         )
 

embedchain/loaders/github.py

@@ -2,116 +2,297 @@ import concurrent.futures
 import hashlib
 import logging
 import os
+import re
+import shlex
+from typing import Any, Dict, Optional
 
 from tqdm import tqdm
 
 from embedchain.loaders.base_loader import BaseLoader
-from embedchain.loaders.json import JSONLoader
-from embedchain.loaders.mdx import MdxLoader
-from embedchain.utils import detect_datatype
-
-
-def _load_file_data(path):
-    data = []
-    data_content = []
-    try:
-        with open(path, "rb") as f:
-            content = f.read().decode("utf-8")
-    except Exception as e:
-        print(f"Error reading file {path}: {e}")
-        raise ValueError(f"Failed to read file {path}")
-
-    meta_data = {}
-    meta_data["url"] = path
-    data.append(
-        {
-            "content": content,
-            "meta_data": meta_data,
-        }
-    )
-    data_content.append(content)
-    doc_id = hashlib.sha256((" ".join(data_content) + path).encode()).hexdigest()
-    return {
-        "doc_id": doc_id,
-        "data": data,
-    }
+from embedchain.utils import clean_string
+
+GITHUB_URL = "https://github.com"
+GITHUB_API_URL = "https://api.github.com"
+
+VALID_SEARCH_TYPES = set(["code", "repo", "pr", "issue", "discussion"])
 
 
 class GithubLoader(BaseLoader):
-    def load_data(self, repo_url):
-        """Load data from a git repo."""
+    """Load data from github search query."""
+
+    def __init__(self, config: Optional[Dict[str, Any]] = None):
+        super().__init__()
+        if not config:
+            raise ValueError(
+                "GithubLoader requires a personal access token to use github api. Check - `https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/managing-your-personal-access-tokens#creating-a-personal-access-token-classic`"  # noqa: E501
+            )
+
         try:
-            from git import Repo
+            from github import Github
         except ImportError as e:
             raise ValueError(
-                "GithubLoader requires extra dependencies. Install with `pip install --upgrade 'embedchain[git]'`"
+                "GithubLoader requires extra dependencies. Install with `pip install --upgrade 'embedchain[github]'`"
             ) from e
 
-        mdx_loader = MdxLoader()
-        json_loader = JSONLoader()
+        self.config = config
+        token = config.get("token")
+        if not token:
+            raise ValueError(
+                "GithubLoader requires a personal access token to use github api. Check - `https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/managing-your-personal-access-tokens#creating-a-personal-access-token-classic`"  # noqa: E501
+            )
+
+        try:
+            self.client = Github(token)
+        except Exception as e:
+            logging.error(f"GithubLoader failed to initialize client: {e}")
+            self.client = None
+
+    def _github_search_code(self, query: str):
+        """Search github code."""
+        data = []
+        results = self.client.search_code(query)
+        for result in tqdm(results, total=results.totalCount, desc="Loading code files from github"):
+            url = result.html_url
+            logging.info(f"Added data from url: {url}")
+            content = result.decoded_content.decode("utf-8")
+            metadata = {
+                "url": url,
+            }
+            data.append(
+                {
+                    "content": clean_string(content),
+                    "meta_data": metadata,
+                }
+            )
+        return data
+
+    def _get_github_repo_data(self, repo_url: str):
+        local_hash = hashlib.sha256(repo_url.encode()).hexdigest()
+        local_path = f"/tmp/{local_hash}"
         data = []
-        data_urls = []
 
-        def _fetch_or_clone_repo(repo_url: str, local_path: str):
+        def _get_repo_tree(repo_url: str, local_path: str):
+            try:
+                from git import Repo
+            except ImportError as e:
+                raise ValueError(
+                    "GithubLoader requires extra dependencies. Install with `pip install --upgrade 'embedchain[github]'`"  # noqa: E501
+                ) from e
+
             if os.path.exists(local_path):
                 logging.info("Repository already exists. Fetching updates...")
                 repo = Repo(local_path)
-                origin = repo.remotes.origin
-                origin.fetch()
                 logging.info("Fetch completed.")
             else:
                 logging.info("Cloning repository...")
                 Repo.clone_from(repo_url, local_path)
+                repo = Repo.clone_from(repo_url, local_path)
                 logging.info("Clone completed.")
+            return repo.head.commit.tree
 
-        def _load_file(file_path: str):
-            try:
-                data_type = detect_datatype(file_path).value
-            except Exception:
-                data_type = "unstructured"
-
-            if data_type == "mdx":
-                data = mdx_loader.load_data(file_path)
-            elif data_type == "json":
-                data = json_loader.load_data(file_path)
-            else:
-                data = _load_file_data(file_path)
-
-            return data.get("data", [])
-
-        def _is_file_empty(file_path):
-            return os.path.getsize(file_path) == 0
-
-        def _is_whitelisted(file_path):
-            whitelisted_extensions = ["md", "txt", "html", "json", "py", "js", "jsx", "ts", "tsx", "mdx", "rst"]
-            _, file_extension = os.path.splitext(file_path)
-            return file_extension[1:] in whitelisted_extensions
-
-        def _add_repo_files(repo_path: str):
-            with concurrent.futures.ThreadPoolExecutor(max_workers=4) as executor:
-                future_to_file = {
-                    executor.submit(_load_file, os.path.join(root, filename)): os.path.join(root, filename)
-                    for root, _, files in os.walk(repo_path)
-                    for filename in files
-                    if _is_whitelisted(os.path.join(root, filename))
-                    and not _is_file_empty(os.path.join(root, filename))  # noqa:E501
-                }
-                for future in tqdm(concurrent.futures.as_completed(future_to_file), total=len(future_to_file)):
-                    file = future_to_file[future]
+        def _get_repo_tree_contents(repo_path, tree, progress_bar):
+            for subtree in tree:
+                if subtree.type == "tree":
+                    _get_repo_tree_contents(repo_path, subtree, progress_bar)
+                else:
+                    assert subtree.type == "blob"
                     try:
-                        results = future.result()
-                        if results:
-                            data.extend(results)
-                            data_urls.extend([result.get("meta_data").get("url") for result in results])
-                    except Exception as e:
-                        logging.warn(f"Failed to process {file}: {e}")
-
-        source_hash = hashlib.sha256(repo_url.encode()).hexdigest()
-        repo_path = f"/tmp/{source_hash}"
-        _fetch_or_clone_repo(repo_url=repo_url, local_path=repo_path)
-        _add_repo_files(repo_path)
-        doc_id = hashlib.sha256((repo_url + ", ".join(data_urls)).encode()).hexdigest()
+                        contents = subtree.data_stream.read().decode("utf-8")
+                    except Exception:
+                        logging.warning(f"Failed to read file: {subtree.path}")
+                        progress_bar.update(1) if progress_bar else None
+                        continue
+
+                    url = f"{repo_url.rstrip('.git')}/blob/main/{subtree.path}"
+                    data.append(
+                        {
+                            "content": clean_string(contents),
+                            "meta_data": {
+                                "url": url,
+                            },
+                        }
+                    )
+                if progress_bar is not None:
+                    progress_bar.update(1)
+
+        repo_tree = _get_repo_tree(repo_url, local_path)
+        tree_list = list(repo_tree.traverse())
+        with tqdm(total=len(tree_list), desc="Loading files:", unit="item") as progress_bar:
+            _get_repo_tree_contents(local_path, repo_tree, progress_bar)
+
+        return data
+
+    def _github_search_repo(self, query: str):
+        """Search github repo."""
+        data = []
+        logging.info(f"Searching github repos with query: {query}")
+        results = self.client.search_repositories(query)
+        # Add repo urls and descriptions
+        urls = list(map(lambda x: x.html_url, results))
+        discriptions = list(map(lambda x: x.description, results))
+        data.append(
+            {
+                "content": clean_string(desc),
+                "meta_data": {
+                    "url": url,
+                },
+            }
+            for url, desc in zip(urls, discriptions)
+        )
+
+        # Add repo contents
+        for result in results:
+            clone_url = result.clone_url
+            logging.info(f"Cloning repository: {clone_url}")
+            data = self._get_github_repo_data(clone_url)
+        return data
+
+    def _github_search_issues_and_pr(self, query: str, type: str):
+        """Search github issues and PRs."""
+        data = []
+
+        query = f"{query} is:{type}"
+        logging.info(f"Searching github for query: {query}")
+
+        results = self.client.search_issues(query)
+
+        logging.info(f"Total results: {results.totalCount}")
+        for result in tqdm(results, total=results.totalCount, desc=f"Loading {type} from github"):
+            url = result.html_url
+            title = result.title
+            body = result.body
+            if not body:
+                logging.warn(f"Skipping issue because empty content for: {url}")
+                continue
+            labels = " ".join([label.name for label in result.labels])
+            issue_comments = result.get_comments()
+            comments = []
+            comments_created_at = []
+            for comment in issue_comments:
+                comments_created_at.append(str(comment.created_at))
+                comments.append(f"{comment.user.name}:{comment.body}")
+            content = "\n".join([title, labels, body, *comments])
+            metadata = {
+                "url": url,
+                "created_at": str(result.created_at),
+                "comments_created_at": " ".join(comments_created_at),
+            }
+            data.append(
+                {
+                    "content": clean_string(content),
+                    "meta_data": metadata,
+                }
+            )
+        return data
+
+    # need to test more for discussion
+    def _github_search_discussions(self, query: str):
+        """Search github discussions."""
+        data = []
+
+        query = f"{query} is:discussion"
+        logging.info(f"Searching github repo for query: {query}")
+        repos_results = self.client.search_repositories(query)
+        logging.info(f"Total repos found: {repos_results.totalCount}")
+        for repo_result in tqdm(repos_results, total=repos_results.totalCount, desc="Loading discussions from github"):
+            teams = repo_result.get_teams()
+            # import pdb; pdb.set_trace()
+            for team in teams:
+                team_discussions = team.get_discussions()
+                for discussion in team_discussions:
+                    url = discussion.html_url
+                    title = discussion.title
+                    body = discussion.body
+                    if not body:
+                        logging.warn(f"Skipping discussion because empty content for: {url}")
+                        continue
+                    comments = []
+                    comments_created_at = []
+                    print("Discussion comments: ", discussion.comments_url)
+                    content = "\n".join([title, body, *comments])
+                    metadata = {
+                        "url": url,
+                        "created_at": str(discussion.created_at),
+                        "comments_created_at": " ".join(comments_created_at),
+                    }
+                    data.append(
+                        {
+                            "content": clean_string(content),
+                            "meta_data": metadata,
+                        }
+                    )
+        return data
+
+    def _search_github_data(self, search_type: str, query: str):
+        """Search github data."""
+        if search_type == "code":
+            data = self._github_search_code(query)
+        elif search_type == "repo":
+            data = self._github_search_repo(query)
+        elif search_type == "issue":
+            data = self._github_search_issues_and_pr(query, search_type)
+        elif search_type == "pr":
+            data = self._github_search_issues_and_pr(query, search_type)
+        elif search_type == "discussion":
+            raise ValueError("GithubLoader does not support searching discussions yet.")
+
+        return data
+
+    def _get_valid_github_query(self, query: str):
+        """Check if query is valid and return search types and valid github query."""
+        query_terms = shlex.split(query)
+        # query must provide repo to load data from
+        if len(query_terms) < 1 or "repo:" not in query:
+            raise ValueError(
+                "GithubLoader requires a search query with `repo:` term. Refer docs - `https://docs.embedchain.ai/data-sources/github`"  # noqa: E501
+            )
+
+        github_query = []
+        types = set()
+        type_pattern = r"type:([a-zA-Z,]+)"
+        for term in query_terms:
+            term_match = re.search(type_pattern, term)
+            if term_match:
+                search_types = term_match.group(1).split(",")
+                types.update(search_types)
+            else:
+                github_query.append(term)
+
+        # query must provide search type
+        if len(types) == 0:
+            raise ValueError(
+                "GithubLoader requires a search query with `type:` term. Refer docs - `https://docs.embedchain.ai/data-sources/github`"  # noqa: E501
+            )
+
+        for search_type in search_types:
+            if search_type not in VALID_SEARCH_TYPES:
+                raise ValueError(
+                    f"Invalid search type: {search_type}. Valid types are: {', '.join(VALID_SEARCH_TYPES)}"
+                )
+
+        query = " ".join(github_query)
+
+        return types, query
+
+    def load_data(self, search_query: str, max_results: int = 1000):
+        """Load data from github search query."""
+
+        if not self.client:
+            raise ValueError(
+                "GithubLoader client is not initialized, data will not be loaded. Refer docs - `https://docs.embedchain.ai/data-sources/github`"  # noqa: E501
+            )
+
+        search_types, query = self._get_valid_github_query(search_query)
+        logging.info(f"Searching github for query: {query}, with types: {', '.join(search_types)}")
+
+        data = []
+
+        with concurrent.futures.ThreadPoolExecutor(max_workers=4) as executor:
+            futures_map = executor.map(self._search_github_data, search_types, [query] * len(search_types))
+            for search_data in tqdm(futures_map, total=len(search_types), desc="Searching data from github"):
+                data.extend(search_data)
+
         return {
-            "doc_id": doc_id,
+            "doc_id": hashlib.sha256(query.encode()).hexdigest(),
             "data": data,
         }

poetry.lock

@@ -337,6 +337,26 @@ description = "The uncompromising code formatter."
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
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@@ -6088,13 +6178,54 @@ description = "Database Abstraction Library"
 optional = false
 python-versions = ">=3.7"
 files = [
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+    {file = "SQLAlchemy-2.0.22-py3-none-any.whl", hash = "sha256:3076740335e4aaadd7deb3fe6dcb96b3015f1613bd190a4e1634e1b99b02ec86"},
     {file = "SQLAlchemy-2.0.22.tar.gz", hash = "sha256:5434cc601aa17570d79e5377f5fd45ff92f9379e2abed0be5e8c2fba8d353d2b"},
 ]
 
@@ -7543,7 +7674,7 @@ community = ["llama-hub"]
 dataloaders = ["beautifulsoup4", "docx2txt", "duckduckgo-search", "pypdf", "pytube", "sentence-transformers", "unstructured", "youtube-transcript-api"]
 discord = ["discord"]
 elasticsearch = ["elasticsearch"]
-git = ["gitpython"]
+github = ["PyGithub", "gitpython"]
 gmail = ["llama-hub", "requests"]
 huggingface-hub = ["huggingface_hub"]
 images = ["ftfy", "pillow", "regex", "torch", "torchvision"]
@@ -7567,4 +7698,4 @@ youtube = ["youtube-transcript-api", "yt_dlp"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.12"
-content-hash = "ea063cadfefd23d4c9b2a25c9096efe6bcedc367136d819ccb1fd2f510a91206"
+content-hash = "776ae7f49adab8a5dc98f6fe7c2887d2e700fd2d7c447383ea81ef05a463c8f3"

pyproject.toml

@@ -136,6 +136,7 @@ psycopg-pool = { version = "^3.1.8", optional = true }
 mysql-connector-python = { version = "^8.1.0", optional = true }
 gitpython = { version = "^3.1.38", optional = true }
 yt_dlp = { version = "^2023.11.14", optional = true }
+PyGithub = { version = "^1.59.1", optional = true }
 
 [tool.poetry.group.dev.dependencies]
 black = "^23.3.0"
@@ -192,7 +193,7 @@ gmail = [
 json = ["llama-hub"]
 postgres = ["psycopg", "psycopg-binary", "psycopg-pool"]
 mysql = ["mysql-connector-python"]
-git = ["gitpython"]
+github = ["PyGithub", "gitpython"]
 youtube = [
     "yt_dlp",
     "youtube-transcript-api",

tests/loaders/test_github.py

@@ -0,0 +1,33 @@
+import pytest
+
+from embedchain.loaders.github import GithubLoader
+
+
+@pytest.fixture
+def mock_github_loader_config():
+    return {
+        "token": "your_mock_token",
+    }
+
+
+@pytest.fixture
+def mock_github_loader(mocker, mock_github_loader_config):
+    mock_github = mocker.patch("github.Github")
+    _ = mock_github.return_value
+    return GithubLoader(config=mock_github_loader_config)
+
+
+def test_github_loader_init(mocker, mock_github_loader_config):
+    mock_github = mocker.patch("github.Github")
+    GithubLoader(config=mock_github_loader_config)
+    mock_github.assert_called_once_with("your_mock_token")
+
+
+def test_github_loader_init_empty_config(mocker):
+    with pytest.raises(ValueError, match="requires a personal access token"):
+        GithubLoader()
+
+
+def test_github_loader_init_missing_token():
+    with pytest.raises(ValueError, match="requires a personal access token"):
+        GithubLoader(config={})